Betacoronavirus PanGenome DB
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Applications | Methods

Reference: Functional pangenome analysis suggests inhibition of the protein E as a readily available therapy for COVID-2019 (submitted). A preprint is available at BioRxiv and at KAUST repository


Software and website: PanGenome DB is being developed at CBRC, KAUST and is powered by panX


Logo and website © 2020 All rights reserved.

intikhab.alam at kaust.edu.sa allan.kamau at kaust.edu.sa


 Computational Bioscience Research Center Thuwal, Saudi Arabia

About PanGenome DBThis database contains a pan genome of all complete viruses from BetaCoronaVirus. Here "panX" methods were employed to extract and compare and visualize genes from different genomes in order to create clusters of related genes defining a core genome (genes present in all genomes compared) and also accessory genome (genes present in some but not all genomes). Core gene clusters were used in producing species tree while all individual gene clusters were used in producing gene family trees. Alignments from which these trees were produced are available for download. Comments, suggestions for improvements, bug reports etc are welcome.